Sunday Dec 05, 2010

Video Lectures on Parallel Programming

A series of 7 short video introductions into parallel programming are now available on line. They can be viewed here. Each video is about 10-15 minutes long and covers a specific topic, or topics. Although it is recommended to view them in sequence, this is not required.

The slides are available as well and can be downloaded from the same web page.

Readers interested in these topics may also want to take a look at the "Parallel Programming with Oracle Developer Tools" white paper. There is little overlap between the two. The videos cover the big picture, whereas the paper goes into much more detail on the programming aspects.


The first video sets the stage. It covers the more general topic of application performance tuning, summarizing the different ways how to optimize an application, with parallelization being one of them.

The second video is about multicore architectures. The main purpose of this talk is to underline that multicore is here today and supported by all major microprocessor manufacturers. Admittedly, the processors covered here have been replaced by their respective successors, but that is in the nature of the beast. This topic is after all a moving target, since new microprocessors appear on the horizon all the time. For the purpose of the talks given here, the processor details are not relevant however. Of course there is an impact on the performance, but when parallelizing an application, the details of the processor architecture need not be taken into account.

The most important thing to realize is that there are three features that are going to stay for a long time to come. First of all, multicore is not going to go away; developers can count on any new general purpose microprocessor to support parallel execution in hardware. Secondly, not only does the number of threads continue to increase, the cost of a thread continues to come down too.

The next video covers parallel architectures. There are even more different architectures than processors. This is why the systems described here are generic and covered at the block diagram level. The goal is to help understand at a high level what the differences between an SMP system, a single/multi core cluster and a cc-NUMA system are.

Video number 4 is another conceptual talk, but with an exclusive focus on parallel programming. This is where you'll find more about topics like threads, parallel overheads and Amdah'ls law.

By then, all necessary information to get started writing a parallel program has been covered and it is high time to dig deeper into parallel programming.

The fifth video covers the Message Passing Interface (MPI) in some detail. This is a widely used distributed memory model, targeting a cluster of systems.  MPI has been around for quite some time, but is still alive and kicking. Many recent other distributed memory programming models (e.g. CUDA) rely on the same principles. This is why the information presented here is of more general use than to those only interested in using MPI.

The next video is about shared memory parallel programming, starting with automatic parallelization. Often overlooked, but absolutely worth giving a try. The mechanism is simply activated by using the appropriate option on the compiler. Success or failure depends on many factors, but compiler technology continues to improve and can handle increasingly complex code structures.

OpenMP is  the second shared memory model covered in this video. It is a mature and easy to use directive based model to explicitly parallelize applications for multicore based systems. Due to the multicore revolution, interest in OpenMP has never been as strong as it is today.

Clusters of multicore based systems are more and more common. The question is how to program them. This is where the Hybrid Parallel Programming model comes into the picture. It is the topic of the short 7-th video. With a Hybrid model, a distributed memory model (like MPI) is used to parallelize the application across the nodes of the cluster. Within the node one can either use MPI (or a similar model) again, but since the overhead of such models tends to be relatively high, a more lightweight model like OpenMP (or a native threading model like POSIX threads) is often more efficient.

This last video only touches upon this important and interesting topic. Those interested to learn much more about it may want to read the appropriate chapters in my white paper on parallel programming.

The title of this 7-th talk includes "What's Next?". It is very hard to predict what's down the road two or more years from now, but it is very safe to assume that parallel computing is here to stay and will only get more interesting. Anybody developing software is strongly advised to look into parallel programming as a way to enhance the performance of his or her application.


I would like to acknowledge Richard Friedman and Steve Kimmey at Oracle, as well as Deirdré Straughan (now at Joyent) for their support creating these videos and to make them available to a wide audience.

Sunday May 09, 2010

Parallel Programming with Oracle Developer Tools

Multicore? Threads? Parallel Programming Models? OpenMP? MPI? Parallel Architectures? Amdahl's Law? Efficiency? Overhead?

If you're interested in what these mean, plus other topics fundamental to parallel programming, read on!

With great pleasure I announce the availability of a comprehensive technical white paper, titled "Parallel Programming with Oracle Developer Tools". It targets the developer new to parallel programming. No background in this topic is assumed. The paper is available through the Oracle Solaris Studio web page and can also be downloaded directly here

Quite often I get asked how to get started with parallel programming. There is a lot of training material in the form of books, online tutorials and blogs available, but most of these focus on a few specific and specialized topics only. Where and how to begin can therefore be an overwhelming problem to the developer who is interested to apply parallelization as a way to further enhance the performance of his or her application.

For a number of years I've given talks that cover the various aspects of parallel programming, targeting the developer who wants to learn more about this topic. What was missing was a write up of these talks. To address this gap, I started working on a comprehensive technical white paper on the basics of parallel programming and am very glad it is out now. The paper will help you to get started with parallel programming and along the way you'll learn how to use the Oracle Solaris Studio Compilers and Tools to get the job done.

I would like to encourage you to download and read the paper, but for those that like to get more detail on the contents first, a fairly extensive summary of the contents can be found below. 

Enjoy the paper and I welcome your feedback!


Summary of "Parallel Programming with Oracle Developer Tools"

The paper starts with a brief overview of multicore technology. This is after all what drives the increased and more widespread interest in parallel computing.

In the next chapter, some important terminology is explained. Since it plays such a crucial role in parallel programming, the concept of a "thread" is covered first. The goal of parallelization is to reduce the execution time of an application. It is the next topic and may seem trivial, but I found that not everybody is aware of the fact that a performance improvement is not a given. Here, the stage is set for a more extensive discussion on parallel performance in a later chapter. The chapter concludes with a definition of parallelization.

The chapter following is about parallel architectures. One can develop and run a parallel program on any computer, even on one with a single core only, but clearly multiple cores are needed if a performance gain is to be expected. Here an overview is given of the types of basic parallel architectures available today.

The choice of a specific platform not only affects the performance, but to some extent is also determined by the parallel programming model chosen to implement the parallelism. That is the topic of the next chapter.

There are many ways to implement parallelism in an application. In order to do so, one has to select a parallel programming model. This choice is driven by several factors, including the programming language used, portability, the type of application and parallelism, the target architecture(s) and personal preferences.

An important distinction is whether the parallel application is to be run on a single parallel computer system ("shared memory'), or across a cluster of systems ("distributed memory"). This choice has a profound impact on the choice of a programming model, since only a few models support a cluster architecture.

In the chapter, several programming models for both types of architectures are presented and discussed, but by no means is this an extensive overview of the entire field. That is a big topic in itself and beyond the scope of the paper. 

The more in-depth part of the chapter starts with Automatic Parallelization by the compiler. Through a compiler switch, the user requests the compiler to identify those parts in the program that can be parallelized. If such an opportunity is found, the compiler generates the parallel code for the user and no extra effort is needed. The Oracle Solaris Studio compilers support this feature.

We then zoom in on OpenMP for shared memory and MPI for distributed memory programming. These are explicit programming models to parallelize an application and have been selected because they are the dominant parallel programming models in technical computing. They are however strong candidates to parallelize other types of applications too. 

The chapter concludes with the Hybrid programming model, combining two parallel programming models. For example, MPI is used to parallelize the application at a fairly high level. The more fine grained parts are then further parallelized with OpenMP, or another shared memory model. In certain cases this is a natural way to parallelize an application. The Hybrid model also provides a natural fit for today's systems, since many consist of a cluster with multicore nodes.

The next chapter is very extensive and covers an example in great detail. The computation of the average of a set of numbers was chosen, since this is a real world type of operation and parallelizing it is not entirely straightforward.

In the first section, Automatic Parallelization by the Oracle Solaris Studio compilers is introduced and demonstrated on this example. The compiler is able to identify the parallelism in this computation and generates a parallel binary without the need for the user to do anything, other than using some compiler switches (-xautopar and -xreduction to be more precise).

Next, a general strategy how to explicitly parallelize this computation is given. This provides the general framework for the various parallel implementations.

Using this framework, the parallel version of the computation is then implemented using OpenMP, MPI and the MPI+OpenMP Hybrid model. Full source code for all 3 implementations is shown and discussed in great detail. Throughout, it is demonstrated how the Oracle Solaris Studio compilers and the Oracle Message Passing Toolkit can be used to compile and run these parallel versions.

Now that the parallel program has been designed and implemented, it is time to consider other, more advanced, aspects of parallel computing. These topics are covered in the next chapter. They are not needed to get started, but are important enough to read up on. For example, how parallelization may affect the round off behavior in case floating-point numbers are used.

The majority of the chapter is however dedicated to performance, since that is after all the goal of parallelization. In addition to parallel overheads, parallel speed up and efficiency, Amdahl's Law is derived and discussed in quite some detail. This formula plays a very important role to understand the measured performance of a parallel application. As shown, it can also be used to assert how well the application has been parallelized and what performance to expect when increasing the number of threads.

The last chapter presents performance results obtained with the 3 different parallel versions discussed earlier. It is demonstrated how the performance of these various implementations depends on the number of threads.

Tuesday Mar 31, 2009

PPCES 2009, Aachen, Germany, March 23-27, 2009

The RWTH Aachen University in Aachen, Germany, organized and hosted the first "Parallel Programming in Computational Science and Engineering" (PPCES) HPC tutorials series. It was held March 23-27, 2009. I participated as well as presented several times throughout the week.

This tutorial was a natural follow on to the "SunHPC" workshops held from 2001-2007 and the combined SunHPC 2008 and VI-HPS event in 2008. 

This first PPCES tutorial week was very well attended and the group also actively participated. Many of the talks have been recorded and will appear on line.  I'll add a link when they are available.

Below I include some pictures of Aachen, with its beautiful historic old city.

Parts of the outer wall are still present. This is the Pontwall, near the Pontstraße, where one enters the city from the A4 (Aachen-Laurensberg exit). The second picture was made on the backside, facing the city.

Pontwall, Aachen

Pontwall, Aachen

The market square is the most prominent place in the old city. There are several restaurants and shops, but literally the most visible building is the huge and beautiful town hall. Below a picture of this building as seen from the square, plus a shot taken at the back side.

Aachen Town Hall

Aachen Town Hall, view from the back side

The huge cathedral is a true landmark and on the UNESCO world heritage list. It is also the burial site of Charlemagne. On the first picture below it can be seen on the left. The second picture has a more up close view. The third picture was taken from the other side. There is a small square between the town hall and cathedral. That's where this picture was made.

Cathedral is seen on the left Aachen cathedral up close

Aachen cathedral as seen from the other side

The picture below was taken in one of the small streets near the big market square. It was taken on the only day the weather was relatively good while I was there. It was somewhat chilly and windy, but shielded from the wind one could sit outside, as shown by the people at the end this street.

Small street near the market square

This fountain is very funny to see and a great attraction for children in particular. It is very fascinating to them that you can turn the hands around. This fountain is in another fairly narrow street, connecting the market square and cathedral. On busy days it can be really crowded here.

Fountain near the cathedral

The picture below was made while I stood on the small balcony in front of the main entrance to the town hall. On the left you can see one of my favorite places there. It is a fixed stop each day I walk to the RWTH.

View on the market square, standing on the stairs of the town hall

One of the nice other things about Aachen is the choice of restaurants.  One of my favorites is the "Best Friends" restaurant in the Pontstraße. It offers a variety of Asian dishes and I really enjoyed the Bento Box. The picture below was made when I went there with a couple of friends. No comments necessary I think.

Best Friends restaurant in the Pontstrasse

Dieter an Mey and his team at the Computer Centre of the RWTH always do a great job in general, but they also select really good places for the social dinner.  We've been at the Kazan restaurant a couple of times before and have never been disappointed regarding the food and the service. Below a picture made of the restaurant, followed by a live in action picture, shot by Agnes Mendes from the RWTH.

The Kazan restaurant

The social dinner

Saturday Feb 21, 2009

HPCVL, February 14-21, 2009

February 14-21 I was in Canada to give two classes on parallel programming at HPCVL. The first session was held at the HPCVL facilities in Kingston, ON. February 18 I travelled to Toronto, ON. The second class was held February 19-20 at Ryerson University. I'd been at HPCVL (Kingston and Ottawa) mid august 2008. Back then it was  still summer. Quite warm and sunny with a lot of outdoor activities. This time it was really winter still, as demonstrated by the pictures below. In Kingston I stayed in the same hotel as before, the Holiday Inn Waterfront. I had a very nice corner room on the highest floor with a great view on Lake Ontario.

The 2 pictures below are taken from my balcony. The water is frozen, but there is a pathway for the ferry. On the first picture you can see the Royal Military College on the other side of the bay. The second picture has a close up of the ferry.

View from balcony 

Ferry as seen from my balcony

The next two pictures are taken from the little park facing the harbor on Ontario street. On the second picture my hotel can be seen. It is the yellow building on the left. My room was on the 5-th floor, in the top right hand corner.

Harbour view 

Downtown KingstonThe following two pictures are taken in the downtown part of Kingston. The first one was made with my back facing the harbor. On the second picture you can see a small ice skating rink. A very nice idea. When I made this picture the ice was just cleaned and there are no people back on the ice yet, but this changed a few minutes later. The rink was pretty full with people then.

Harbour and hotel view

Downtown Kingston The last picture of Kingston is a beautiful sunrise. I was up early and saw this view while working on my laptop in my room. I went out on the balcony to shoot this picture. It was pretty cold, but worth doing. Note that the moon is still visible.

Sunrise in Kingston

The 4 pictures below were taken in Toronto. The first picture shows the building where the class was held. The second picture shows some more detail of this street. The university is very close to the Toronto Eaton Center with a big mall and office buildings. This center is on the left on the third picture. I thought the fourth picture is funny. This squirrel was very curious and I could not resist making a picture of this little animal.

Ryerson University - Building where class was held 

Street impression

Yonge Street

A very curious squirrel

Saturday February 21 I travelled to the San Francisco Bay Area for a week with meetings. I had a connecting flight through Chicago and the weather got pretty bad. Our plane had to be de-iced twice. When we were on the runway to take off, we had to return to the gate for the second de-icing. Given the weather conditions it was pretty impressive we were able to take off after all. The 4 pictures below give an impression what it was like.

View from my seat De-icing the plane

Getting ready to take off In the air!

 

About

Picture of Ruud

Ruud van der Pas is a Senior Staff Engineer in the Microelectronics organization at Oracle. His focus is on application performance, both for single threaded, as well as for multi-threaded programs. He is also co-author on the book Using OpenMP

Cover of the Using OpenMP book

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